Showing posts with label summary. Show all posts
Showing posts with label summary. Show all posts

Thursday, January 1, 2015

Human Cases of Avian Influenza Infections in 2014

January 01, 2015 0 Comments


In 2014, 366 human cases of avian influenza infection from four subtypes, A(H7N9), A(H5N1), A(H5N6) and A(H10N8) were reported from 7 countries, China, Egypt, Taiwan, Malaysia, Cambodia, Indonesia, and Vietnam. The case-fatality risk ranged from possibly as low as .22 to as high as .67 among these subtypes in 2014. There is no evidence among any of these subtypes of sustained human-to-human transmission.


Influenza viruses that easily circulate among human populations are referred to as seasonal influenza viruses and can cause severe illness in 3 to 5 million individuals annually.[1] Avian influenza Type A viruses that cause infection in birds are referred to as avian influenza viruses. These viruses occur naturally among wild birds worldwide and can infect domestic poultry and other bird and animal species.[2] These avian influenza viruses circulating in bird populations do not usually infect humans. However, sometimes humans can become infected with avian influenza subtypes which have the potential to reassort into pandemic viruses. Avian influenza viruses that have infected humans include A(H5N1), A(H7N7), A(H7N9), A(H9N2), and others.

Four subtypes of avian Influenza, A( H7N9), A(H5N1), A(H10N8), and A(H5N6) caused sporadic human infections in 2014. In 2014, avian influenza H7N9 infected 317 people in the People’s Republic of China (China). Also in 2014, 44 human cases of H5N1 were reported from 5 countries. Also, a few sporadic cases of H10N8 and H5N6 were reported from China.

Avian Influenza A(H7N9)

The first case of human infection with the novel reassortant avian-origin influenza A (H7N9) virus was reported from China in 2013.[3] By the end of 2013, a total of 158 human cases were reported from China by the World Health Organization (WHO). In 2014, 312 additional cases of H7N9 were reported through December 31, 2014 by WHO.[4] Three of these cases were individuals infected in China but reported and treated in Taiwan (2) and Malaysia (1). All of the remaining cases were reported from China. In addition to the cases reported by WHO, local health agencies in Zhejiang and Guangdong provinces in China have announced 5 additional cases through December 31, 2014 that have yet to be reported by WHO.

In total, since the beginning of H7N9 outbreak in China in 2013, at least 475 individuals have been infected. Ages of infected individuals range from less than 1 year old to 91 years old with a median age of 58 years old. Infections among males exceed infections among females by about 2:1.

An overall case-fatality risk is difficult to derive based on published information. WHO has only reported 105 confirmed H7N9 deaths which would result in a case-fatality risk of .22. While there have been some reports of recoveries of cases in China, the outcome of more than 250 cases is unknown. A recent published report indicates that there have been at least 170 deaths in China through July 2014.[5] This would results in a case-fatality risk of .39 as of July 2014. A more recent article estimates the hospital fatality rate during the second wave in 2014 at 48% for hospitalized H7N9 cases.[6] It is not possible to directly derive the number of fatal cases of H7N9 from this article to compute an overall case-fatality risk.

In 2013, H7N9 cases were concentrated in eastern China. The provinces of Zhejiang, Shanghai, and Jiangsu accounted for about 75% of all reported cases that year. More than 30% (101) of all 2014 H7N9 cases were reported from Guangdong Province, a province that only reported 10 cases in 2013. Zhejiang Province continues to report a high number of H7N9 infections. Shanghai reported fewer infections in 2014, while several other provinces in eastern China reported increases in cases over the previous year or their first confirmed cases. Of concern is that Xinjiang Uygur Autonomous Region reported eight cases H7N9 in 2014. Xinjiang Uygur Autonomous Region is located in western China, far from the provinces in eastern China where the H7N9 outbreak has been concentrated.

Table 1. Number of H7N9 Cases by Province in China 2013-2014.


Figure 1. Geographic Distribution of A(H7N9), A(H5N1), A(H10N8), and A(H5N6) in China (2003-2014)





Origin of A(H7N9)
The circulation of A(H9N2) influenza genotypes in chicken populations in China resulted in the novel H7N9 virus that is infecting humans.[7,8] Research indicates that multiple strains of H7N9 and H9N2 influenza viruses are circulating in poultry in Guangdong Province, continually creating an environment that is “rich for reassortment of these viruses and that poses an ongoing risk for human infection.”[9] Other researchers suggest that H7N9 infecting humans originated in waterfowl in Taihu Lake region in Zhejiang Province where some of the first human cases were recorded.[10]

A(H7N9) Co-infections with Seasonal Influenza
Not only is reassortment of H7N9 subtype in bird populations a concern, but reassortment between H7N9 and seasonal influenza could lead to more efficient or sustained human-to-human transmission and possibly a pandemic. There are reports from China detailing three cases of human co-infection of A(H7N9) with seasonal influenza subtypes of A(H3N2), A(H1N1)pdm09, and influenza B virus that widely infect humans.[11,12] Dual influenza infections raise the risk of reassortment of human and avian subtypes. Adding to the concern is that a small percentage, about 10%, of contacts of H7N9 cases showed elevated levels of H7N9 antibody in study from Jiangsu Province and “offer evidence that human-to-human transmission of H7N9 virus may occur among contacts of infected persons.”[13]

Confusing the issue of H7N9 co-infection with seasonal influenza is a recent published report that estimates that thousands of symptomatic cases of H7N9 occurred in 2013 and 2014 in the provinces of Shanghai, Zhejiang, and Jiangsu. [14, see table]. Each symptomatic human case of H7N9 represents a potential for pandemic reassortment.

Family Clusters of A(H7N9)
Most reported H7N9 cases are sporadic cases of community acquired infections with limited evidence of human-to-human transmission. Transmission of novel influenza viruses in family groups can be a signal of increasing efficiency of human-to-human transmission. However, only minimal information on family clusters of H7N9 cases is publicly available. During the initial stages of the outbreak in China in 2013, a few small family clusters were reported.[15] In 2014, at least four separate family clusters of H7N9 cases occurred in Zhejiang and Guangdong provinces.[16,17] The pediatric cases in the clusters from Guangdong Province only exhibited mild symptoms and virus isolates from patients in the same cluster shared high sequence similarities. Community acquired infection from poultry or live bird markets poultry or a contaminated environment could account for these clusters. These data are evidence that efficient or sustained person-to-person transmission of H7N9 has not yet occurred.

Avian Influenza A(H5N1)

Avian influenza A(H5N1) was first detected in humans in Hong Kong in 1997. Since 2003, WHO has officially reported a total of 676 confirmed human cases of H5N1 from 16 countries.[18] The most recent WHO timeline of significant events associated with the H5N1 was updated on December 4, 2014.[19] The last WHO report summarizing H5N1 cases was also published on December 4, 2014.[20] Since that date, the Ministry of Health in Egypt has announced an additional 17 human cases of H5N1 through December 31, 2014, raising the total of confirmed world-wide H5N1 infections to 693. The count of confirmed H5N1 cases in 2014 is 44.

Sixteen countries have reported human H5N1 cases to WHO.[18] Through 2012, H5N1 cases were restricted to countries in the Eastern Hemisphere. On January 3, 2014, a woman from Canada infected with H5N1 died, but because she exhibited symptoms in late December 2013 she is counted as a 2013 case by WHO. This case from Canada is the first to be reported from the Western Hemisphere. In 2014, 29 cases were reported from Egypt, 9 from Cambodia, and 2 each from China, Indonesia, and Vietnam.

Figure 2. All countries reporting human H5N1 cases since 2003. 

Compared to 2013, the number of H5N1 cases in 2014 has increased by about 12%. Of the 44 reported cases in 2014 20 were male and 22 were female, the gender of two children were not identified. Females (52%) outnumber males (48%) among reported cases in 2014. Overall, females represent about 53% of all of the WHO-reported H5N1 cases where gender was noted. The male-female sex ratio for H5N1 cases is very different than the ratio for human H7N9 cases.

In 2014, the age of H5N1 cases ranged from one year old to 75 years old with a median age of 12. In 2013, children under 10 years old were the most commonly infected individuals. In 2014, young children were again frequently infected. This contrasts with H7N9 infection which occurs primarily among elderly individuals.

Figure 3. Comparison of H7N9 and H5N1 by Age Groups. 

Of the 44 cases in 2014, 20 are reported to have died. The case-fatality risk for H5N1 cases is .45 for the 2014 calendar year as of December 31, 2014. Because numerous cases reported in December in Egypt are still hospitalized, additional deaths among these cases may occur. Notably, with 29 confirmed H5N1 cases in 2014, Egypt has now overtaken Indonesia as the country with the greatest number of overall confirmed H5N1 cases.

Figure 4. Comparison of the Number of Reported H5N1 Cases by Country.



Most of the H5N1 cases in 2014 were reported from Egypt (66%). Although a number of these cases were reported from the same general location, it is not possible to speculate whether they represent clusters of cases that would signal human-to-human transmission. While H5N1 continues to be a potential pandemic threat, the limited number of cases in 2014 suggests that H5N1 has not yet achieved the ability to efficiently transmit between humans.

Avian Influenza A (H10N8)

The first reported human case of a novel influenza A(H10N8) subtype was reported in November 2013 in China. A 73-year-old woman from the Donghu District, Nanchang, Jiangxi Province experienced onset on November 28, 2013 and was hospitalized on November 30, 2013. She died nine days later on December 6, 2013. The woman had visited a live bird markets several days before onset.[21] 

In 2014, two additional human cases of H10N8 have been reported, both from China. The first is a 55-year-old woman who was hospitalized on January 15, 2014. This woman is from Nanchang, Jiangxi Province. [21] This woman visited a live bird market on January 4, 2014.

The second human H10N8 case in 2014 was a 75-year-old man from Nanchang, Jiangxi Province. He experienced onset on February 2, was hospitalized, and died on February 8, 2014.[22] A retrospective serological study in Guangdong Province indicates that 3 animal workers (out of 827) may have had subclinical H10N8 infections prior to November of 2013.[23]

Since 1965, H10N8 seems to have been circulating among wild and domestic birds in at least seven countries (China, Italy, United State of America, Canada, South Korea, Sweden and Japan).[21] Recent analysis suggests that the reported human cases of H10N8 in China resulted from exposure in live bird markets and that H10N8 had been circulating in these markets for months.[24,25] There is a potential for more sporadic infections of H10N8 in the future, especially because WHO notes that influenza viruses are unpredictable.

Avian Influenza A(H5N6)

Chinese authorities first reported the avian influenza A( H5N6) virus in poultry in April 2014.[26] During that same time, China also reported the first human case of influenza A(H5N6). A respiratory tract sample from a 49-year-old man from Nanchong, Sichuan Province tested positive for H5N6. He later died of died of severe pneumonia.[27,28] In December 2014, a second human infection of H5N6 was confirmed. A 58-year-old man from Guangzhou, Guangdong Province experienced onset on December 1 and was hospitalized on December 9, 2014. The individual is currently in critical condition. Contact tracing of this second case has failed to identify any additional cases.[29,30] H5N6 has also been detected outside of China in domestic poultry flocks in Laos and Vietnam [26,31]. WHO states “given that the disease {H5N6} seems already widespread in poultry, further sporadic human cases or small clusters of infection would not be unexpected.” [27]

Other Avian Influenza Viruses (H5N8 and H5N2)

In 2014 other Highly Pathogenic Avian Influenza (HPAI) subtypes of H5N2 and H5N8 were reported from various locations around the world including, East Asia, Europe, and North America [32,33,34]. These reported infections occurred in wild migratory birds as well as commercial poultry from flocks. No confirmed human infections of H5N8 or H5N2 have been reported through the end of 2014 although the possibility of future human infections from these two avian influenza viruses cannot be discounted.

Discussion

Almost 400 people were infected with novel avian influenza viruses in 2014 primarily in China. The case-fatality risk for human avian influenza infection in 2014 is not clear but varies depending on the subtype. There is uncertainty about the extent of subclinical infections of these avian influenza viruses in the general population which would affect the spread of these viruses if one reassort into a pandemic strain. As yet, there is no evidence that any of these novel avian influenza viruses that infected humans in 2014 can efficiently infect and transmit between humans. Continued global surveillance to detect virological, epidemiological, and clinical changes associated with circulating influenza viruses is vital to human and animal health.

Acknowledgements and Notes
I thank all of the international and national public health agencies and ministries of health, posters at FluTrackers.com, and other internet disease trackers for their online efforts to announce and track human cases of various avian influenza strains. Thanks are also due to open source journals and researchers who post full copies of their papers and data sets.

The data and information used here have been derived from numerous publicly available sources including WHO, various ministries of health, internet bloggers, internet forums, and other media reports available online through December 31, 2014. For some individual cases, specific details are lacking or conflicting information is presented in online reports. However, the information and graphics presented here are based on data which is believed to be reasonably accurate and current through December 31, 2014.

References
  
[3] Human Infection with a Novel Avian-Origin Influenza A (H7N9) Virus

[4] Human infection with avian influenza A(H7N9) virus – China

[7] Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus

[11] Human co-infection with novel avian influenza A H7N9 and influenza A H3N2 viruses in Jiangsu province, China

[24] Human Infection with Influenza Virus A(H10N8) from Live Poultry Markets, China, 2014

[31] Outbreaks of bird flu reported in Vinh Long, Tra Vinh, Quang Ngai





Sunday, January 5, 2014

A Comparative Discussion of the Influenza A(H7N9) and Influenza A(H5N1) Outbreaks

January 05, 2014 0 Comments

The first human cases of infection from a reassortant avian influenza  A(H7N9) virus were reported from the People’s Republic of China (China) on March 31, 2013.[1] Since then more than 145 confirmed and probable human cases of H7N9 infection have been officially reported. Of the cases reported through December 31, 2013, about 71% are male and 29%, female. Among the reported cases, the ages range from 2 years old to 91 years old. The median age is 60.

Besides two imported case in Taiwan, one in April and one in December 2013, all other H7N9 have occurred within the country of China. A recent summary of human H7N9 cases is presented on pages 102 and 103 in Update on the situation of avian influenza A(H7N9) infection by the Hong Kong Centre for Health Protection.[2] Another current summary is available from the European Center for Disease Prevention and Control.[3] The last official World Health Organization (WHO) tabulation of cases was published in October 25, 2013.[4]

 

Geographic Distribution

Beside the two imported cases identified in Taiwan, the remaining 145+ cases have been reported from 13 provinces and municipalities in an area covering more than 1.3 million square kilometers in eastern China.[3] The wide geographic spread of these cases, in less than 12 months, and the fact that most of these cases are sporadic cases suggests that the infection source for H7N9 is widespread throughout eastern China.
Map: Heat map of the geographic distribution of human H7N9 cases in China between February and December 2013.
Initial investigations in early 2013 suggested that some of the H7N9 infections were caused by exposure to poultry. In a tabulation of samples testing positive for H7N9, chickens and environmental samples (most from live bird markets) frequently tested positive.[5] These data indicate that chickens are the most likely host reservoir for the virus although a few ducks and pigeons have also tested positive for H7N9. H7N9 infection in poultry sources is unlike Influenza A(H5N1) infection  which often causes extreme morbidity and mortality in poultry populations. H7N9 does not seem to be fatal for poultry stock, as evidenced by the dispersed geographic distribution of positive H7N9 animal and environmental samples.

 

H7N9 Clusters

A human cluster of cases is generally defined by WHO as two or more cases of confirmed, probable, or suspected infections with onset of illness occurring within the same two-week period and who are in the same geographical area and/or are epidemiologically linked.

At least six human H7N9 clusters, including both confirmed and probable cases, have been identified among the reported H7N9 cases from China. Three family clusters occurred between February and April 2013. These clusters include a father and two sons in Shanghai Province in February and March, 2013, a husband and wife from Shanghai Province in March and April, 2013, and a father and daughter from Jiangsu Province in April 2013. In addition, one neighborhood cluster including one adult and two children occurred in Houshayu in Shunyi District, Beijing Municipality in April, 2013.[6][7]

Another confirmed family cluster in Zaozhuang, Shangdong was reported in April 2013. This cluster includes a 36-year-old man and his 4-year-old son.[8] Most recently, a family cluster consisting of 57 year-old man and his 30-year-old son-in-law was reported from Zhejiang Province in December 2013.[9]

 

Comparison of Human H7N9 and H5N1 infections

At least two published papers provide epidemiological comparisons between H5N1 and H7N9 cases. Influenza A(H5N1) is another emerging infectious disease. It was first identified in 1997 and since that infected more 650 individuals from 15 countries around the world.

A paper published in June 2003 in Lancet entitled Comparative epidemiology of human infections with avian influenza A H7N9 and H5N1 viruses in China: a population-based study of laboratory-confirmed cases compares 43 reported H5N1 cases from China with 130 H7N9 cases through May 24, 2013. Another article, entitled Age-specific and sex-specific morbidity and mortality from avian influenza A(H7N9), reports on 136 H7N9 cases by age and sex with comparisons to H5N1 cases. Both of these articles are published in journals behind a pay wall. The details and results the analysis are not publicly available, although there are significant differences between the outbreaks of H7N9 and H5N1.

In less than 12 months since the initial H7N9 cases were reported, more than 145 peoples have been infected. The official WHO count of human H5N1 infections did not reach 145 cases until 24 months after WHO starting reporting cases in December of 2003. It was the resurgence of the H5N1 virus in a family cluster from Fujian, China in January 2003 [10] that reignited the concern for this emerging disease, although WHO did not officially start tracking H5N1 cases until January of 2004. For comparison, the initial 11 month period from January to December in 2004 (corresponding with the 11 months that have passed since the reporting of the initial H7N9 cases) only 48 human H5N1 cases were reported.

Age and Gender Differences

People of different ages are differentially infected by these two novel influenza viruses. The median age of infection for H5N1 cases is 18 years old. For H7N9, the median age is 60 years old. About 79% of H5N1 cases are less than 30 years in age. Of all of the H7N9 cases, 70% are older than 50 years.

Graph: Comparison of differential infection by Age Group of H7N9 and H5N1. 

These two influenza viruses seem to attack by gender differentially as well. Females are more likely to be infected with H5N1 than males. In contrast, males are more than twice as likely to be infected by H7N9 as females.

Graph: Comparison of differential gender infection of H7N9 and H5N1.


Mortality Comparison 
Through December 31, 2013 the case-fatality ratio for H7N9 is .31; for all WHO-confirmed H5N1 cases the CFR is .53. The differential infection rate by age groups between H7N9 and H5N1 cases limits any meaningful comparison for mortality rates among these two novel infectious influenza viruses.

 

Discussion

The lack of human H7N9 clusters indicates that the sporadic human infections are not a result of widespread human-to-human transmission. Additionally, the lack of H7N9 infections among health care workers indicates that human-to-human transmission is rare. The far-reaching geographic distribution of sporadic human H7N9 cases in China suggest the infection source is widely spread, and possibly ubiquitous, in Eastern China. The limited temporal data available suggests that H7N9 infections will follow cyclical seasonal pattern of seasonal influenza similar to the season pattern of H5N1 infections.

Graph: Percent of all H7N9 and H5N1 cases by month of infection.
As with H5N1, poultry exposure is the primary source of H7N9 infection. In contrast to HPAI H5N1 infections in poultry populations, H7N9 does not cause large-scale morbidity and mortality in domestic poultry populations. This makes surveillance for both human cases and animal outbreaks more challenging.

In 2003, influenza H5N1 reemerged as a potential pandemic threat. In 2013, another reassortant virus, H7N9, began infecting humans and this virus may also have the potential to spawn a pandemic. Finally, just few weeks ago another novel influenza virus A(H10N8) infected a woman in China. This is first known case of a human H10N8 infection. With three novel influenza virus with possible epidemic or pandemic potential, public health officials and government agencies need to expand surveillance and promote additional influenza research and vaccine development.


Acknowledgements and Notes

I thank all of the internet sources, posters at FluTrackers.com, and other internet disease trackers for their online efforts to follow and track H7N9 and other emerging infectious diseases. Thanks are also due to open source journals and researchers who post full copies of their papers and data sets.

The data and information used here have been derived from numerous publicly available sources including WHO, various ministries of health, internet bloggers, Internet forums, and other media reports available online through December 31, 2013. For some individual cases, specific details are lacking or conflicting information is presented in online reports. There are also discrepancies in case statistics reported by various public health organizations and government agencies. However, the information and graphics presented here are based on data which is believed to be reasonably accurate and current through December 31, 2013.



[1] www.who.int/csr/don/2013_04_01/en/index.html

[2] www.chp.gov.hk/files/pdf/cdw_compendium_2013.pdf 

[3] http://www.ecdc.europa.eu/en/publications/Publications/Communicable-disease-threats-report-4-jan-2014.pdf

[4] http://www.who.int/entity/influenza/human_animal_interface/influenza_h7n9/10u_ReportWebH7N9Number.pdf
 
[5] http://www.flutrackers.com/forum/showthread.php?t=213227

[6] http://www.flutrackers.com/forum/showpost.php?p=494384&postcount=1

[7] http://www.nejm.org/doi/suppl/10.1056/NEJMoa1304617/suppl_file/nejmoa1304617_appendix.pdf

[8] http://www.flutrackers.com/forum/showthread.php?p=497695

[9] http://www.who.int/csr/don/2013_12_10/en/index.html
 
[10] http://www.dh.gov.hk/textonly/english/useful/useful_ld/useful_ld_h5n12003.html

Wednesday, January 1, 2014

A Review of Human Influenza A(H5N1) Cases in 2013

January 01, 2014 0 Comments

In 2013, 38 human cases of Influenza A(H5N1)  were reported from around the world. This number represents an 18% increase over the number of reported cases in 2012. Six countries reported cases in 2013, Bangladesh, Cambodia, China, Egypt, Indonesia, and Vietnam. Cambodia reported about 71% (27) of all cases reported in 2013.   In 2013, children younger than 10 years old represent about 63% of all cases. No human clusters were reported in 2013. Relative to other countries, Cambodia experienced the greatest percentage increase in human infections in a short period of time. The continued low frequency of reported infections does not eliminate H5N1 as a pandemic threat.  


Influenza A(H5N1), (often referred to “bird flu” or avian influenza or HPAI), is an emerging infectious disease. It was first detected in humans in Hong Kong in 1997. Since 2003, the World Health Organization (WHO) has been monitoring human outbreaks of H5N1. Through December 31, 2013, WHO has officially reported a total of 648 confirmed human cases of H5N1. The most current WHO summary report on H5N1 is Influenza at the human-animal interface: Summary and assessment as of 20 December 2013.  The most recent WHO time line of significant events associated with the H5N1 virus was last updated on December 17, 2012 (link).The following summary of human cases of H5N1 in 2013 is generally organized according to the outline presented previously in “H5N1 in 2012: The Year in Review”. (link)

Since 2003, 15 countries have reported human H5N1 cases to WHO (link). The count of WHO-confirmed H5N1 cases in 2013 is 38.  Compared to 2012, the number of H5N1 cases increased by about 18%. In 2013, 6 countries reported human cases of H5N1, Bangladesh (1 case), Cambodia (26), China (2), Egypt (4), Indonesia (3), and Vietnam (2). These same six countries were the only countries to report H5N1 cases in 2012. 

Geographic Distribution

More than 60% of the H5N1 cases reported in 2012 occurred in Egypt and Indonesia. In 2013, more than 60% of the H5N1 cases were reported from Cambodia. Between 2003 and 2012, Cambodia had only reported 21 cases. In  the 12 month period of  2013, Cambodia reported  26 H5N1 cases, more than doubling  the count of previously reported cases. Indonesia continues to lead the world in cumulative number of reported human H5N1 cases with 195.  Egypt is second with 173 reported cases.  Based on the total number of cases reported, Cambodia now exceeds China and Thailand in total count of cases. It now ranks fourth behind Indonesia, Egypt, and Vietnam.

Map: WHO map of countries (Administrative level 1) with human H5N1 cases in 2013.

 Map: All countries reporting human H5N1 cases since 2003. 

Map: The approximate geolocations of H5N1 cases in Cambodia from 2003-2013.

Gender Statistics

Of the 38 reported cases in 2013 19 were male and 19 were female, although in the past females outnumbered males among reported cases. Overall, females represent about 53% of all of the WHO-reported H5N1 cases where sex was noted.  In 2013, 12 of the males died as did an equal number of females (12). 

Age Statistics

In 2013, the age of H5N1 cases ranged from less than one year old to 58 years old with a median age of 6. Children under 10 years old were the most commonly infected individuals. Twenty-four (63%) of the 38 cases were less than 10 years old in age.
Graph: Comparison of H5N1 infections in 2012 and 2013 by age group.


Twenty-two of the 24 children in 2013 were reported from Cambodia.  Only two other children were reported, a four-year-old from Vietnam and a one-year-old from Bangladesh.  Among all H5N1 cases, the greatest number cases are children in the 0-10-years-old age group.

Graph: All H5N1 cases by age group, 2003 to 2013.

Mortality Statistics

Of the 38 cases in 2013, 24 died. The  case-fatality ratio (CFR) is .625 for the 2013 calendar year. Over the past several years the CFR has not appreciably decreased.  Although there is inter-year variability, the overall CFR for the 648 WHO reported cases is .59.

As in previous years, children continued to have a slightly better survival rate than infected adults.  The CFR for the 24 children under 10 years old is .54, while the CFR for the 14 individuals older than 10 years is .78.

With the 26 cases and 14  deaths, Cambodia now has the second highest CFR rate at .70. Among the countries reporting at least 25 H5N1 cases, only Indonesia, with a CFR of .84, exceeds the CFR in Cambodia.

Table: H5N1 mortality by age group in 2013.

Seasonality

As noted previously, human H5N1 cases do not randomly occur throughout the year, but the number of cases fluctuates in a pattern similar to that of seasonal influenza in the northern hemisphere (link). Below is a current graph of the month of onset for almost all of the worldwide confirmed cases since 2009.  

Graph: Monthly H5N1 case count, 2009 to 2013. 


H5N1 Clusters

All 38 cases reported to WHO in 2013 represent sporadic cases. No clusters, as defined by WHO, were identified in 2013.  A cluster is defined as two or more cases of confirmed, probable, or suspected Influenza A(H5N1) infections with onset of illness occurring within the same two-week period and who are in the same geographical area and/or are epidemiologically linked. (link)

Discussion

In summary, the 38 H5N1 cases reported in 2013 is a slight increase over 2012, but less than the highest yearly total of 115 cases in 2006.  The concentration of 27 cases in Cambodia including 24 infected children is unusual, and the lack of reported clusters in 2103 is notable as well. As noted in 2012,  there has been an observable trend of an increasing number of H5N1 infections among young children. That trend has continued in 2013 with 63 % of the cases being younger than 10 years old. Previous analyses suggested that this age group had a high recovery rate. However, the infected children in 2013 had much lower survival rate. The reason for low recovery rates in children in Cambodia deserved further research.

Gain of function research in 2011 demonstrated that, in theory, only a few genetic changes are necessary for H5N1 to become an aerosolized pandemic virus.  While media attention in 2013 has focused on the Middle East respiratory syndrome coronavirus and  the novel influenza virus  A(H7N9), H5N1 continues to a pandemic threat, even if it is not receiving media attention.

 

 

Acknowledgements and Notes

I thank all of the internet sources, posters at FluTrackers.com, and other internet disease trackers for their online efforts to follow and track H5N1 cases. Thanks are also due to open source journals and researchers who post full copies of their papers and data sets.

The data and information used here have been derived from numerous publicly available sources including WHO, various ministries of health, internet bloggers, internet forums, and other media reports available online through December 31, 2013. For some individual cases, specific details are lacking or conflicting information is presented in online reports. However, the information and graphics presented here are based on data which is believed to be reasonably accurate and current through December 31, 2013.

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